I don't think you have to sit there holding a button for 15 minutes!!
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Exactly right. Once the base control has been Hacked, the Hacking part of the base take-over is done. Now you need to defend the control panel for 15 minutes and prevent enemies from re-Hacking it back to their side. During the 15 minutes you are defending, the base is neutral, and nobody can use it for anything. Once the 15 minutes is up, the base is yours.